Category Archives: Moorea Coral Reef (MCR)

Understanding Coral Bleaching: Research and Lessons from Mo’orea

by Jannine Chamorro, Moorea Coral Reef LTER

Last September I had the opportunity to participate in a project studying coral bleaching in Mo’orea, French Polynesia. This was the first time I had ever worked in a remote field location. While initially the thought of flying to a place I could not see on a map made me queasy, I am forever grateful for this unforgettable experience and all it taught me.

The project, led by Professor Marie Strader at Auburn University, focused on examining how population level patterns of epigenetic marks, such as DNA methylation, shift during and after a bleaching event in the coral species Acropora hyacinthus. For those unfamiliar with epigenetics, they are modifications to DNA that do not change the DNA sequence. DNA methylation, a commonly quantified epigenetic mechanism, is the addition of a methyl group to the DNA molecule. Environmentally induced changes in methylation patterns of the genome can influence gene expression and subsequently phenotype. Therefore, understanding how DNA methylation patterns change in re­­sponse to a bleaching event is important, as it will give us insight on the role of epigenetic mechanisms in response to ecologically relevant environmental stress.

Tackling research questions such as these start in the field requiring a wide range of unconventional skills, from using a hammer and chisel underwater to gently washing tissue off of coral skeletons. It was the opportunity to use these skills that made me most excited about participating on this project. While there are tons of details I can get into, I will briefly try and summarize the field methods used in this project. First, establishing a baseline is important to track changes in these molecular mechanisms over time. Therefore, at the beginning of the bleaching event, divers tagged, photographed, and sampled coral colonies at various Mo’orea Coral Reef (MCR) LTER sites around the island. Colonies were then resurveyed and sampled at four time points over the course of the bleaching event. In total this resulted in countless hours underwater and over 1500 samples collected!

Researchers, Kelly Speare and Marie Strader, collecting coral colonies.

As the time progressed, corals showed remarkable variation in their bleaching response. While many of the corals colonies unfortunately died, many others either recovered from the bleaching event or were resilient. Determining if there are molecular differences, genetic or epigenetic, in these coral colonies will be exciting and can bring us one step closer in determining the role of molecular mechanisms in species resistance to environmental stress.

Corals demonstrated drastic differences in bleaching severity.


One of the highlights of working on this project and conducting research at a remote field location is that it allowed me to develop my skills as a field biologist. While its location makes it a place of wonder, this introduced challenges when conducting experiments due to the limited access to equipment and supplies. These limitations meant we had to be resourceful and inventive to execute our experiments. An example being our coral transporter, an essential tool for bringing colonies to and from the boat; it was a dishrack.

The greatest lesson I learned in field biology was the importance of a supportive team and good communication. Having only been diving off the coast of California, I was thrilled to dive in the warm waters of Moorea. However, I was also a bit nervous about this completely new location. It made all the difference being comfortable enough with my team and knowing that I had their support. We understood that our safety was the priority above all research. Additionally, proper communication was also important as it ensured everyone was on the same page allowing experiments to run as smoothly as possible.

The amazing team that worked on this project. (Left to right: Logan Kozal, Kelly Speare, Marie Strader, Terence Leach and Jannine Chamorro)

I am thankful to have been given the opportunity to work on this project with such a great team. Apart from conducting significant and inspiring research, waking up to chickens, swimming with humpback whales, and playing with the station dogs became my new normal for a very short but wonderful time. While some days were exhausting going from hours of diving to hours in the lab, I look back at it as one of the greatest experiences in my research career.

Penny, one of the lovely station pups.


Author Biography: Jannine is a PhD student in the Hofmann Lab at the University of California-Santa Barbara. She studies physiological and molecular mechanisms organisms employ to deal with rapid environmental change. While she is associated with the Santa Barbara Coastal LTER, she became involved in the MCR LTER coral bleaching project after working with Dr Marie Strader during her time with the Hofmann Lab.


Deep Sea Diving on Shallow Reefs

I’m a coral reef ecologist. This means I go SCUBA diving every day to conduct my research in lovely tropical places where corals grow. It is pretty amazing work. During the months that I have to study the coral reefs in Moorea, French Polynesia (an island a few miles from Tahiti) I set up experiments in the ocean and sometimes in large salt water tanks on the shore. We (myself and other researchers I work with) drive small boats out to our research sites, gear up and hop in to do our work. Here, I am on my way out to a research site to set up an experiment using small cages. You can see my boat is absolutely loaded with equipment; I’m in for a long day in the water.


I’m often asked how deep I dive when I’m conducting my research and the answer is usually a surprise to my friends and family. Shallow! Holy moly it is shallow where I do my studies! The average depth on a typical dive is between 5-7 feet. You may ask, why the heck are you SCUBA diving if you can just stand up and breathe the air? That’s a great question, and sometimes I do snorkel while I do my work, holding my breath while I need to be under the water and coming up for air. But other times I need to be down on the sea floor for hours at a time counting or measuring small corals and would easily lose track if I went up for air. Here is a photo of me snorkeling on a typical day estimating how much coral is present on this coral reef. And another where I’m SCUBA diving to set up an experiment hauling heavy cinder blocks around with my experimental corals attached (and dancing around like they’re pom poms); so grateful for the lack of gravity under the water.

One reason why I can do my research so shallow is because most corals grow very shallow. Corals rely on photosynthetic algae living within them and need clear water and lots of light to grow. On a coral reef most of the action happens in the first 30 feet of water depth. This turns out to be pretty convenient for coral reef scientists like myself because the deeper you SCUBA dive the more safety precautions you must take and the shorter the time you can be down at your maximum depth. If you dive super deep (near 100 feet) your time at the bottom can be limited to just minutes! It would take me a whole lot of dives to get to find and measure 500 corals at that rate.



Author: Stella Swanson

Stella Swanson is a PhD student from the University of California, Santa Barbara. She studies how sea urchins and fish can influence the recovery of damaged coral reefs.